The "Correlation matrix" dialog box (Fig. 3.9.1) can be accessed from the "Select most correlated genes for specified gene set" (if the "View corr. matrix in separate window" box is checked) and the "correlation analysis setup" dialog boxes.
Main menu commands.
Figure 3.9.1 "Correlation matrix" dialog box.
1. Main menu. 2. Correlation matrix.
The "Setup for correlations graph" dialog box (Fig. 3.9.1.1) is called by selecting the Graph>Line plot command on the main menu or pressing the Ctrl+L keys on your keyboard. In this dialog box, you can define the parameters of graphical representation of the correlation matrix in the profile dialog box (about the profile dialog box, see. 3.17):
3.9.1.1. The "Set 1 (rows)" list includes genes that will comprise Set 1.
3.9.1.2. The "Set 2 (columns)" list includes genes that will comprise Set 2.
3.9.1.3. "Select X-Y axis representation" offers two options of axis representation:
3.9.1.4. Control buttons:
Figure 3.9.1.1 "Setup for correlations graph" dialog box.
1. The "Set 1" list of genes. 2. The "Set 2" list of genes. 3. The "Select X-Y axis representation" pane. 4. The "OK" button that closes the dialog box and applies changes. 5. The "Cancel" button that closes the dialog box and ignores changes.
Figure 3.9.1.2 Profile dialog box.
1. The "Set 1" list of genes. 2. The "Set 2" list of genes. 3. The "Select X-Y axis representation" pane. 4. The "OK" button that closes the dialog box and applies changes. 5. The "Cancel" button that closes the dialog box and ignores changes.